Malang → Yogyakarta · ± 378 km (garis lurus)
Ringkas: Kereta Malioboro Ekspres (ML-YK) melayani rute Malang–Yogyakarta dengan 60 perhentian/singgah menurut GAPEKA. Waktu tiba & berangkat tiap stasiun tercantum pada tabel di bawah.
| # | Stasiun | Tiba | Berangkat |
|---|---|---|---|
| 1 | Malang awal | 00:00 | 08:00 |
| 2 | Malang Kotalama | — | 08:04 |
| 3 | Pakisaji | — | 08:16 |
| 4 | Kepanjen | 08:28 | 08:31 |
| 5 | Ngebruk | — | 08:42 |
| 6 | Sumberpucung | — | 08:48 |
| 7 | Karangkates lewat | — | — |
| 8 | Pogajih | — | 09:00 |
| 9 | Plampangan lewat | — | — |
| 10 | Kesamben | — | 09:10 |
| 11 | Wlingi | 09:24 | 09:26 |
| 12 | Talun | — | 09:32 |
| 13 | Garum | — | 09:43 |
| 14 | Gebang (Blitar) lewat | — | — |
| 15 | Blitar | 09:54 | 09:58 |
| 16 | Rejotangan | — | 10:13 |
| 17 | Ngunut | — | 10:22 |
| 18 | Sumbergempol | — | 10:31 |
| 19 | Tulungagung | 10:38 | 10:41 |
| 20 | Ngujang | — | 10:49 |
| 21 | Kras | — | 10:58 |
| 22 | Ngadiluwih | — | 11:05 |
| 23 | Kediri | 11:17 | 11:20 |
| 24 | Susuhan | — | 11:26 |
| 25 | Minggiran | — | 11:32 |
| 26 | Papar | — | 11:36 |
| 27 | Purwoasri | — | 11:42 |
| 28 | Kertosono | — | 11:50 |
| 29 | Baron | — | 11:57 |
| 30 | Sukomoro | — | 12:05 |
| 31 | Nganjuk | 12:10 | 12:12 |
| 32 | Bagor | — | 12:18 |
| 33 | Wilangan | — | 12:25 |
| 34 | Saradan | — | 12:33 |
| 35 | Caruban | — | 12:40 |
| 36 | Babadan | — | 12:46 |
| 37 | Madiun | 12:53 | 12:58 |
| 38 | Stasiun Barat | — | 13:07 |
| 39 | Geneng | — | 13:13 |
| 40 | Ngawi | — | 13:18 |
| 41 | Kedunggalar | — | 13:25 |
| 42 | Walikukun | — | 13:32 |
| 43 | Kedungbanteng | — | 13:41 |
| 44 | Kebonromo | — | 13:45 |
| 45 | Sragen | — | 13:49 |
| 46 | Masaran | — | 13:56 |
| 47 | Kemiri | — | 14:02 |
| 48 | Palur | — | 14:06 |
| 49 | Solo Jebres | — | 14:09 |
| 50 | Solo Balapan | 14:14 | 14:18 |
| 51 | Purwosari | — | 14:22 |
| 52 | Gawok | — | 14:27 |
| 53 | Delanggu | — | 14:31 |
| 54 | Ceper | — | 14:35 |
| 55 | Klaten | — | 14:42 |
| 56 | Srowot | — | 14:47 |
| 57 | Brambanan | — | 14:52 |
| 58 | Maguwo | — | 14:58 |
| 59 | Lempuyangan | — | 15:03 |
| 60 | Yogyakarta akhir | 15:06 | — |
Waktu bersifat lokal (WIB/WITA/WIT sesuai daerah) dan mengikuti GAPEKA. Jadwal dapat berubah — konfirmasi di kanal resmi KAI.